rs259278087 SNP Detail

Summary

• ID
  rs259278087
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134591422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTCTGTCT GAaaggggac ttattaggat
  aacttacagg ctgtggtcca cccaattcag caatggctgc ctatgaatgg aaagtccaag
  aatccagtag tttttaaaaa tccacgaagc tggatgtctc agcttgtttt cagtatatgc
  S
  aggatcttga agtaggctca aatttcagag aaggagtgga cttgctagcg aggtgagagt
  aagcagacaa aaagggacac ttcctccttc tgtatcccta tataggttcc agcagaagac
  gtggtccaga ctggagctgg gtcccacttc                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319983756	CHEV_1_136560261	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259278087					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134591422 () rs orientation: forward

Symbol	Name	Function Class
Rr418971	regulatory region 418971	1239 bp proximal
Syt2	synaptotagmin II	Intron