rs259274903 SNP Detail

Summary

• ID
  rs259274903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95291004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGAACCC AGGAATCCAC
  ATGCTGGAAG GAGAGAAATG ATCCTTATGA GTTGTTCTTT GAAATCCATA TGTGCTCCCT
  GACACATAAT CCTCCCATCC ACATACACAC AGGAGGCAAA ACCAAGAATG TTAATGGTTT
  GACTTGGTCC CACTTTCCAG AAAAATCCAT GTTATGAGTA AGGTTCAGCT GAAGTATTCC
  Y
  TTAGAGTTCT AATAAAGTAT ATGAATAAGA CATTTCTAGA GCATATCTTA CACAAATTGG
  GATGGAAGAA TGGAGCTCAG GTTTATTTAT TTATTTATTT ATTTATTCAC TGATCGCAGC
  CACACACCCC TACAATTTTT TAAACACGCG TGTGTATAGG ATGTACATGT GACACAGCAC
  TGATATGGAC ATCAGAGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378551968	MGP_WTSI_9_95309370	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259274903					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378551968	MGP_WTSI_9_95309370	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95291004 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	1681 bp upstream
Gm8449	predicted gene 8449	1718 bp downstream
Gm35915	predicted gene, 35915	397 bp downstream
Gm37805	predicted gene, 37805	383 bp downstream
Rr684790	regulatory region 684790	1586 bp distal
Rr684791	regulatory region 684791	667 bp distal
Tssr86547	transcription start site region 86547	1512 bp downstream
Tssr90904	transcription start site region 90904	1832 bp upstream
Tssr90905	transcription start site region 90905	1760 bp upstream
Tssr90906	transcription start site region 90906	1739 bp upstream
Tssr90907	transcription start site region 90907	1712 bp upstream
Tssr90908	transcription start site region 90908	1675 bp upstream
Tssr90909	transcription start site region 90909	1652 bp upstream
Tssr90910	transcription start site region 90910	1618 bp upstream
Tssr90911	transcription start site region 90911	1590 bp upstream
Tssr90912	transcription start site region 90912	1172 bp upstream