rs259266378 SNP Detail

Summary

• ID
  rs259266378
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83995812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTAAGCAT CCACATAAGC
  AGAGTTGGTT GTCTGCCCTG CCAAGTCATA CAGGGAGCAG GTGTGGAGGG CACGAGCAGG
  ATATCCCCTC TGAAAGTGTT GTGTCCCTCA AAATGAAAAG GGCCGGGACC ATGCCCCCGC
  CCCACCCCCA TTTACCTGCT GGAGTGTGTG GGGGTGGAGG TGGGGAAGAG AAGCTTGGGT
  S
  CTGTTGGGAA GGATCTTCCT AAGCTGTTAC AGGATCAGAC AACACACAGA TGCGTGCTCA
  GGACTGGAAT GACTTAAGGG TCGTGACTTT AGCAACTTTC TCAACCTTGG AGGGTGAAGA
  GTGCAAAGAT TGTTGCAGTG GAGAACTGCA GGAAATCGAA TGGGCAGCGA CTGGGAACGT
  AGTGTGATTT GAGTTAGACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369042807	MGP_WTSI_6_83968824	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	C	C	G	G	C	G	G	G	G	G	G	G	C	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259266378					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	C	C	G	G	C	G	G	G	G	G	G	G	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369042807	MGP_WTSI_6_83968824	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83995812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17623	CpG island 17623	115 bp proximal
Dysf	dysferlin	Intron
Rr632975	regulatory region 632975	1108 bp distal
Rr632976	regulatory region 632976	1221 bp distal
Rr632977	regulatory region 632977	91 bp proximal
Rr632978	regulatory region 632978	203 bp proximal
Rr632979	regulatory region 632979	1139 bp proximal
Tssr1912	transcription start site region 1912	564 bp upstream
Tssr57398	transcription start site region 57398	516 bp upstream
Tssr57399	transcription start site region 57399	534 bp upstream