rs259233974 SNP Detail

Summary

• ID
  rs259233974
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:110813281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAGGAC AGAATACCTC
  GGATAAAACC CACAGACCAT AAAAAGCTTA ACAACCAGGA AGGCCCAAGT GAGGAGGCTT
  CAATCCCATT TAGAAGGGGG AGCAAAATAA TCACAGGATG CAGAGGGAGG GATAAACCAG
  GGTAGGAGAT GGGAGGGGAA GGGCAAAGGG GGTAAAAGGA TCAGGTATGG TGGAGGAGAC
  W
  GGAGAGAAGC CTAGAGAGCC AGGACAATGA ATGGAAATAT GTAGCCTCAA GCATTGGAGA
  TAGGGGGACT CGCTAGAAAA TACCAGAGAC CTGGGAGGTG AGAGACTCTC AGGACTCAAT
  TGGGGTATCC TTAGCAAAAA TGCCCAACAG TGGAGAGAGG GAACTCCAAT AGTCCACCCC
  CAGTAGATAG ACAGGGCCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320458628	CHEV_2_110823093	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259233974					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:110813281 () rs orientation: forward

Symbol	Name	Function Class
Rr562605	regulatory region 562605	869 bp distal
Rr562606	regulatory region 562606	958 bp distal