rs259229283 SNP Detail

Summary

• ID
  rs259229283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107600757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGAGTG GTCCAGGAAC
  TTGTCAAGCC AGAGCCTTGC AAAGGCTAAC GTTCCATTCT GAAGGTCTCT GCTGTTTCCA
  CAACCACATT AACCCTGCAA GTCCAGAGCC CATTTCCTGC CCAAAAGAAC CAGCTAGTTC
  TTCAGTGAGC TCCACCATCA TGTTACTAAC CCATACCACC AGTGTGGTGT GTGCAGGGCT
  Y
  TCTCAGAGAA TTCTCTGGTT GTTAGTTCTC CCAAGTCTCC CAGTGAGGAT ATGGAGGCTA
  GAGGGTAGGA GATATTAAGT GATGGATTCA GGGTCTGAAC TGTGATGCTG TGCTGACTGC
  CCTGTGACTC CCCAGTGCTT GCAGACCCAG TGGGAGACAC AGGCTGTTCT GTGCCTTCTG
  GGGGTGCGGG GAACAGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250717	CHEV_4_107416165	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259229283					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107600757 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Rr597058	regulatory region 597058	1548 bp proximal