rs259228936 SNP Detail

Summary

• ID
  rs259228936
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113303952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTACTTTC TTCTCGGATT
  GGCTACCTCT AGGGTCAAAT AAGCGGGAGC AAGGATCTAC TTCCGGTGGG AGTAAACTGG
  GACCCGGAAG AACCATACTG GCGCGCCTTT CCAAACCTCG AGGGCTGCGC AGGAGGAGGA
  GGCGCGCGCC GGGAGGTCCT GGGGGCGGGG CCACGTCCGG AGGAAGAGGC GGGGCGTGCT
  S
  CACGGGAGAG CGGAGTGGGG CGTTTAGGGG TTTGGTGGTG TGCGAGAGGC TTTCCTACGA
  GGAGAGGGAA ATTCATTCAA CAGGGACTCA AATTAAAATT ACACCGGACC CATAAGCTAG
  GACCCACGGT GCTACACTCC CGGTGTGTGT GGTCACTTGT GTGCGAGGCT TTAGGACTTG
  GGAAAGTCGA GTTCTGATTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369709953	MGP_WTSI_6_113276985	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259228936					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369709953	MGP_WTSI_6_113276985	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113303952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17839	CpG island 17839	within coordinates
Gm15492	predicted gene 15492	171 bp upstream
Ogg1	8-oxoguanine DNA-glycosylase 1	mRNA-UTR
Rr399830	regulatory region 399830	105 bp downstream
Rr636489	regulatory region 636489	270 bp distal
Rr636490	regulatory region 636490	9 bp distal
Tssr58194	transcription start site region 58194	within coordinates
Tssr58195	transcription start site region 58195	28 bp upstream
Tssr58196	transcription start site region 58196	234 bp upstream
Tssr58197	transcription start site region 58197	252 bp upstream
Tssr62435	transcription start site region 62435	306 bp upstream
Tssr62436	transcription start site region 62436	241 bp upstream