rs259220475 SNP Detail

Summary

• ID
  rs259220475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132648901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctacaagtt atatgaccct gcctcggaaa
  caaacaagaA AAATGTTTAG ATCAAAGTTT TTATGTCCAA GGGGGCCTTC AAACACTATC
  TTTCGGACTC AGTAAACCCA AGTGGCTTAA GGAAAGTATG TGGGCATCTT TTTGGGGGGA
  Y
  GCGGGGAGGT GAACTACACA CAGCGGACGG ACACAGACAC ACATTCTGTA TCTGAAATAT
  CTGAGGATCT GTCAACGGCA ACTCTGCACG AGCTTGCCGA CTTAACTGTT GCTCTCTTGA
  ACCGACGAGG TGGGAGGAAG TTATATATAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321337432	CHEV_4_132477505	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259220475					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132648901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14977	CpG island 14977	392 bp proximal
Fam76a	family with sequence similarity 76, member A	Intron
Gm69717	predicted gene, 69717	within coordinates
Rr398546	regulatory region 398546	1089 bp upstream
Rr601111	regulatory region 601111	35 bp proximal
Rr601112	regulatory region 601112	893 bp proximal
Rr601113	regulatory region 601113	912 bp proximal
Rr601114	regulatory region 601114	1138 bp proximal
Tssr43726	transcription start site region 43726	443 bp upstream
Tssr43727	transcription start site region 43727	897 bp downstream
Tssr43728	transcription start site region 43728	957 bp downstream
Tssr43729	transcription start site region 43729	1000 bp downstream
Tssr43730	transcription start site region 43730	1015 bp downstream
Tssr43731	transcription start site region 43731	1030 bp downstream
Tssr43732	transcription start site region 43732	1037 bp downstream