rs259182815 SNP Detail

Summary

• ID
  rs259182815
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27208928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTGTTT GGATCGGTTG
  CTAGGCCCCA AATCTCATTA AGAGGTTTTT AAAGCACTTT TGAAATTTAG ATTGATAAAT
  TTTATGTGTC TTTTTGCCTA TACATATTAT TTTTTCCTGA ACGTATGTGC ATTTGTGAGT
  GCCTGCTGTC CTTGGACATA GGAGGAGGCC AGATCCCCAG AGACTGGAAT TACAGAGAAT
  K
  ATGAACCACC AGGTGGGTGC TGGAAATCAA ACTCACGGCC TATGTGTGAG AAACAAACGC
  TTTAAACCAC TGAGCCAACT CACTTTAAGC CCAAAATCTA CTTTAAAACC AAAAGAACTT
  CTTGACAGCC TAAGCAGTTC GACAAGTCTA CGGTGAGTTC ATAGAATGAG TAAAACAATC
  TATAGTTTTG TCTGTCTGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss357338606	MGP_WTSI_3_27053701	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs259182815					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357338606	MGP_WTSI_3_27053701	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27208928 () rs orientation: forward

Symbol	Name	Function Class
1700125G22Rik	RIKEN cDNA 1700125G22 gene	within coordinates
Ect2	epithelial cell transforming 2	957 bp upstream
Rr374716	regulatory region 374716	within coordinates
Rr574351	regulatory region 574351	1364 bp distal
Rr574352	regulatory region 574352	936 bp distal
Rr574353	regulatory region 574353	738 bp distal
Rr574354	regulatory region 574354	1959 bp proximal
Tssr28601	transcription start site region 28601	748 bp downstream
Tssr28602	transcription start site region 28602	719 bp downstream
Tssr32836	transcription start site region 32836	937 bp upstream
Tssr32837	transcription start site region 32837	924 bp upstream
Tssr32838	transcription start site region 32838	903 bp upstream