rs259174822 SNP Detail

Summary

• ID
  rs259174822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115216486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACA AGCCGTGGGT GGTAAGCATG
  Y
  CCCCAGAGTA CCTCCAGCAC TCCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321915622	CHEV_6_115189543	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259174822					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115216486 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636939	regulatory region 636939			372 bp distal
Rr636940	regulatory region 636940			910 bp proximal
Rr636941	regulatory region 636941			1691 bp proximal
Syn2	synapsin II			Intron
				Noncoding-Transcript-Variant
Tssr58295	transcription start site region 58295			547 bp downstream