rs259161649 SNP Detail

Summary

• ID
  rs259161649
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13082674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGGATG TGGAGTCAGG
  TGTGGGGGAA GGGAGTGCCT CCGAGGTCCC ATGCTGAGGC ATCCCTCTCC CCTCTTGCCC
  CCCCCCCCCC CCACAGAAGG TATAGTGTAG AATAGAGTTT ATTCAGGACA TGGAGAGGGG
  AGTTGAGGGG ATAGAGACAG AGAAAGACAT AGAGAGAGTA GAAGAGTACA GGCAAGCCAT
  T
  GGGGGGGGGG GATGGGGAGA GAGGGTGATC AGAGGAGAGG ACAGAGTGAA AGCAAGAAAG
  AAAGAGAGAG GAGGGGCCAA GCAGCCCCTT TTATAGTGAG TCAGGCACAC CTGGCTGTTG
  CCAGGTAACT TTGGGGTGGA GCCTAGAGAA AATGCTAACT TTACTAACCA CTAGTGAACT
  AAAATACTAC CAGATTCTTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	PWK/PhJ	QSi5/Ianm	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379478527	MGP_WTSI_10_12926736	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	PWK/PhJ	QSi5/Ianm	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259161649					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379478527	MGP_WTSI_10_12926736	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13082674 () rs orientation: forward

Symbol	Name	Function Class
Gm47402	predicted gene, 47402	1285 bp downstream
Phactr2	phosphatase and actin regulator 2	787 bp downstream