rs259127289 SNP Detail

Summary

• ID
  rs259127289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116130934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGCGAGCTT GCAGGAAGCA CCGATGAACG
  CAACCTAAGA TGGGGACCCC AGTCTGGGTG AGAAATAACA CAGGCTGAGG CCAAAGCTGG
  GGTTCCCTAA CTCCCTGACA TCAGATCAGG AACAGAGGGG GCCGGAGTGC TGAGGATGAC
  R
  AGCCCAGGCG GAGGAGAGCG GGACTCCAGT TTAgctaagc ggcaagtgtc tgggagcact
  gaggggcctt ctgcaggaga cttaggcaga gggtctggac ggcaaaggtt tccccctacg
  gagggacttg atgagagaga gagtccctgg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320894746	CHEV_3_116040203	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259127289					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116130934 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdc14a	CDC14 cell division cycle 14A			Intron
				Noncoding-Transcript-Variant
Cpgi13730	CpG island 13730			within coordinates
Rr583700	regulatory region 583700			1345 bp proximal