rs259119819 SNP Detail

Summary

• ID
  rs259119819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134343449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGAGGGT CGGGGAGGGG
  GGGATGCGGA CAGCAAGCGA GTGTAGGCCG GAGGGGCCTC GGCGAGCTGG CGAACGGGGT
  GGAGGTGAGA GGGCGAGGGG GGCCCGTGCG TCTCGGCCGT GCTCCTGTCA CCGCCGCATG
  GCCGCCCCCG GCGGGGCCTC GCTCCACGCT GGGTCGCCAG ACGCCGGGGG GGGGGGGGGG
  R
  AACAGGGACG AAGCCCAGGG ATAACCGCGG CAGGCGGGCG GCAAGCGCGT GCAGGGAAGC
  GGGGGGGCCG CCGGTGCCCC CTTTTCTCTG CTCTCCCAGC TTATCTCTCA CCCTCCTCCT
  CCTCCTTTTT TTTCCCCCTT TTTTTTTTTT TGCCTTTTTT TTTTTTTTTT TTTTTTTTTG
  TTCCTCGAAG GTGCCGCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss366807839	MGP_WTSI_5_134790465	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs259119819					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366807839	MGP_WTSI_5_134790465	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134343449 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16718	CpG island 16718			within coordinates
Gm71534	predicted gene, 71534			207 bp upstream
Gm71761	predicted gene, 71761			820 bp upstream
Gtf2i	general transcription factor II I			Intron
				mRNA-UTR
Rr378666	regulatory region 378666			174 bp upstream
Rr399401	regulatory region 399401			828 bp downstream
Rr621988	regulatory region 621988			831 bp distal
Rr621989	regulatory region 621989			330 bp distal
Rr621990	regulatory region 621990			77 bp proximal
Rr621991	regulatory region 621991			218 bp proximal
Rr621992	regulatory region 621992			1128 bp proximal
Tssr1657	transcription start site region 1657			361 bp downstream
Tssr49086	transcription start site region 49086			931 bp downstream
Tssr49087	transcription start site region 49087			899 bp downstream
Tssr49088	transcription start site region 49088			604 bp downstream
Tssr49089	transcription start site region 49089			351 bp upstream
Tssr53629	transcription start site region 53629			1376 bp upstream
Tssr53630	transcription start site region 53630			775 bp upstream
Tssr53631	transcription start site region 53631			171 bp upstream
Tssr53632	transcription start site region 53632			143 bp upstream
Tssr53633	transcription start site region 53633			122 bp upstream
Tssr53634	transcription start site region 53634			96 bp upstream
Tssr53635	transcription start site region 53635			47 bp upstream
Tssr53636	transcription start site region 53636			24 bp upstream
Tssr53637	transcription start site region 53637			42 bp downstream
Tssr53638	transcription start site region 53638			83 bp downstream