rs259117825 SNP Detail

Summary

• ID
  rs259117825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151764623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTCTGTCA CCAGTGGCTT CTTCAGGTTC
  TTGTGCAGTT TATAGGATTA GGGAGGGCCA GCTAAGAGTC CCCATGAAGA TAGTAAGCTG
  GTAACGGAGC CAAAGAGAGA CTGTAGAAGG TGGATGCCCC TTCAAGGCTT GTTTTTTTTT
  Y
  TTCACAGTGT TGCAAGGTGT GTAGTAATAA TACTAATAGA AATATACTCT AATGATGTTT
  CCTCTTTCAA CACATGTGTT TTCGTTGGAC AGATGGATTC AACTGTAAGA CACACTTCTT
  AGAACTCGGG GGTGAAGGGA CTGTTTTGAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320060295	CHEV_1_153736002	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259117825					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151764623 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700025G04Rik	RIKEN cDNA 1700025G04 gene			Intron
				mRNA-UTR
Gm28610	predicted gene 28610			1809 bp downstream
Rr420378	regulatory region 420378			813 bp distal
Rr420379	regulatory region 420379			1157 bp proximal