rs259112300 SNP Detail

Summary

• ID
  rs259112300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143912352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAAGTTA TTCAACTTTA
  CTCTGCCAAA TAGGTTTAAT AAATCTCCGA TCTGAGGTTA ATACTAGGGT TGATTATTAA
  TAGTAAGTTC CAGAGAGATT TTTCTGTTGG AAATTATCAT GGAAGTGCAA AGCTGTACTG
  CTAAGTATCA TTAACTAAAA CCAGTCTTGT GGGAGAAGCT TGGAAGAAAG GAAGTTGAAG
  R
  AAAATCAGGC AAAAAATCTA CAGTCCTAGC AGCTGTGTGC AGAATTTTGG TTCTTTAAAC
  TGCCAAAATT AGGGCAAAGG AATAAATATT GCCTATGAAA CCAGGAAGAG GGTGGTTTTA
  ATACCAGTTA AAAATACTCA TTTCTGGATT CTAGCTCCTT GAGTTCCTAA CATGCTACAG
  TTAAAAATTA TTTTTATGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360062430	MGP_WTSI_3_143869555	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259112300					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360062430	MGP_WTSI_3_143869555	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143912352 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13895	CpG island 13895	631 bp distal
Lmo4	LIM domain only 4	1371 bp upstream
Rr398096	regulatory region 398096	811 bp downstream
Rr586601	regulatory region 586601	1382 bp distal
Rr586602	regulatory region 586602	881 bp distal
Rr586603	regulatory region 586603	873 bp proximal
Tssr35968	transcription start site region 35968	1713 bp upstream
Tssr35969	transcription start site region 35969	1662 bp upstream
Tssr35970	transcription start site region 35970	1610 bp upstream
Tssr35971	transcription start site region 35971	1383 bp upstream
Tssr35972	transcription start site region 35972	1061 bp upstream
Tssr35973	transcription start site region 35973	606 bp upstream