rs259106548 SNP Detail

Summary

• ID
  rs259106548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137308100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTTAATTT CAGCACTCAG AAGACAGAAG GAGGAGTATC
  TCCCAAAGTT TAAGACTATC TACAGTGCAT ATCAAGGCCT TACTCAACAT ATAAACAATA
  R
  TAAATGATGA TGATGATGAT GACGAAGATG ATGACGATGA TGACAACAAC CAAGCAGGAG
  TTGCTGGGAG TGGGGGCTGC AGTCCTGTAA TCCCAGCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321365364	CHEV_4_137136704	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259106548					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137308100 () rs orientation: forward

Symbol	Name	Function Class
Gm70277	predicted gene, 70277	within coordinates
Gm70281	predicted gene, 70281	1447 bp downstream
Ldlrad2	low density lipoprotein receptor class A domain containing 2	Intron
Rr602652	regulatory region 602652	633 bp distal
Rr602653	regulatory region 602653	1177 bp proximal
Rr602654	regulatory region 602654	1305 bp proximal