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rs259105628 SNP Detail
Summary
  • ID
    rs259105628
  • Variation Type
    SNP
  • Alleles
    A
Genome Location and Flanking Sequence
  • Location
    Chr4:101348998 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGACGGTTTA CAGCATAGAG
    CTTGAAGGAT GTGACCTTTG CCCCAGATAC AGGCCTTTCC CCATAGCTCT ATCTTTAAAC
    ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACGTTCAC ACACACCTTT
    TTTTAAAAAA TTCATTGGAG ACAAAAGATA GCACAAAGCT TGCTATTGCT TCTCCAAGGT
    A
    CATGGCATTC TAGCAGGCTA CCATTTTAAG TCGGTGCCCA TTTGACCCAG TACATTGAAT
    GCAGTAAAGT TATTGCGAGA ACTGCTCACC ACTTACTTTA CAAATGAGGA AACAGGCTGA
    GCAGTTAGGC AAGAATGATT AAGATTGTGC TGTTCCCAGG AGGCAAAGCG GGAGTCTCAC
    AGCTCTGCTC GTCCTGGAGG                                            
    
    A = A
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss321230234 CHEV_4_101164406 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs259105628 SNP A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:101348998 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D4Mit176 DNA segment, Chr 4, Massachusetts Institute of Technology 176 202 bp proximal
D4Mit176.3 DNA segment, Chr 4, Massachusetts Institute of Technology 176.3 354 bp proximal
Rr596165 regulatory region 596165 1966 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory