rs259105628 SNP Detail

Summary

• ID
  rs259105628
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101348998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACGGTTTA CAGCATAGAG
  CTTGAAGGAT GTGACCTTTG CCCCAGATAC AGGCCTTTCC CCATAGCTCT ATCTTTAAAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACGTTCAC ACACACCTTT
  TTTTAAAAAA TTCATTGGAG ACAAAAGATA GCACAAAGCT TGCTATTGCT TCTCCAAGGT
  A
  CATGGCATTC TAGCAGGCTA CCATTTTAAG TCGGTGCCCA TTTGACCCAG TACATTGAAT
  GCAGTAAAGT TATTGCGAGA ACTGCTCACC ACTTACTTTA CAAATGAGGA AACAGGCTGA
  GCAGTTAGGC AAGAATGATT AAGATTGTGC TGTTCCCAGG AGGCAAAGCG GGAGTCTCAC
  AGCTCTGCTC GTCCTGGAGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321230234	CHEV_4_101164406	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259105628					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101348998 () rs orientation: forward

Symbol	Name	Function Class
D4Mit176	DNA segment, Chr 4, Massachusetts Institute of Technology 176	202 bp proximal
D4Mit176.3	DNA segment, Chr 4, Massachusetts Institute of Technology 176.3	354 bp proximal
Rr596165	regulatory region 596165	1966 bp proximal