rs259068500 SNP Detail

Summary

• ID
  rs259068500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:34074749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCTCCGG GACGCGGGCG
  GGCGGGCGGG CTGGAGCGGC GGGCTGTGGT GCGGGCGCGC CGCCGAGGCC TGGCGGGGTG
  GGGGGCGCGG ACGGGCGGAC TGAGGGACGG ACTGAGGCGG GCAGCTCACT GCGACCCCGC
  GGCGGCGGCC GGGCCCGCCA GGCTCCTCTC CGCCCGCCCG CCCTCCCGCC CGCGGCATGA
  R
  TGGCTGACTC CCCGGCCTAC CCCGGCTTGT GCTGCCCCGG GGGCCCTGCG AACCCACGGC
  GCCCGCCCGC CCGCGTGGAA ACCCGGACGG GCGGCGGGCC CTGGTGGCCG CGGCCTGGGG
  AGCGGGCGGC CCCTTCGCCC CTCGGCCCGG GAGAAATGCG AATTCCGAAG GAAGGGTTCA
  AAGGTGACCC GAGGCCAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss357502402	MGP_WTSI_3_33919522	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs259068500					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357502402	MGP_WTSI_3_33919522	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34074749 () rs orientation: forward

Symbol	Name	Function Class
Fxr1	FMR1 autosomal homolog 1	Intron
Gm43077	predicted gene 43077	718 bp upstream
Rr575095	regulatory region 575095	813 bp distal
Rr575096	regulatory region 575096	482 bp distal
Rr575097	regulatory region 575097	within coordinates
Tssr28785	transcription start site region 28785	717 bp downstream
Tssr28786	transcription start site region 28786	684 bp downstream
Tssr28787	transcription start site region 28787	674 bp downstream
Tssr28788	transcription start site region 28788	661 bp downstream
Tssr28789	transcription start site region 28789	637 bp downstream
Tssr28790	transcription start site region 28790	518 bp downstream
Tssr28791	transcription start site region 28791	490 bp downstream
Tssr32968	transcription start site region 32968	788 bp upstream