rs259059830 SNP Detail

Summary

• ID
  rs259059830
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76869811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCAGGTC AGGAATCACC
  ACGTGCGCCT GCCCCAGCGA CTTTAGAGCA CGTGTTGCCT GCAAGGAAAC CCCACTGCCC
  ACGCCCTGGA CGTGGCGCGC CTCCAAGGCT CATTGTTTAG CTCAGAGGTT GTAGGCACCC
  TGACAACTGT TAACAACTTC CCTTTGGAAC AGGTGGAATC TGCAGCTTGT ACAGGCTGCC
  W
  GTAGTAGCCA GTCTTTTCTG TACTTCCAGC ATCTCTGTGA CAGGGATACT AGACTTGGCT
  AATAGCCTAG GAATAAACCA TATTGACGTG ACTCCTCACC CGGTGAGTGT TCCCATCCTA
  ACTTCCCTGT CTTCACGATG TTGGTCGGAA CCTCAGGGGG CTAGAAGATG TTTGTGGGCC
  TTCTCTCAGT GGAGAGGATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380958678	MGP_WTSI_10_76496722	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259059830					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380958678	MGP_WTSI_10_76496722	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76869811 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1753	CpG island 1753			151 bp distal
Rr434376	regulatory region 434376			1283 bp distal
Rr434377	regulatory region 434377			1303 bp distal
Rr434378	regulatory region 434378			699 bp distal
Rr434379	regulatory region 434379			960 bp distal
Rr434380	regulatory region 434380			813 bp distal
Rr434381	regulatory region 434381			within coordinates
Slc19a1	solute carrier family 19 (folate transporter), member 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr94203	transcription start site region 94203			1722 bp downstream
Tssr94204	transcription start site region 94204			1700 bp downstream
Tssr94205	transcription start site region 94205			1230 bp downstream
Tssr94206	transcription start site region 94206			719 bp downstream
Tssr94207	transcription start site region 94207			693 bp downstream
Tssr94208	transcription start site region 94208			676 bp downstream
Tssr94209	transcription start site region 94209			662 bp downstream
Tssr94210	transcription start site region 94210			1852 bp upstream