rs259037143 SNP Detail

Summary

• ID
  rs259037143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117888637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCACACA GTTAATTATA
  GGAGAGCCAG ACAATTGGCA GGCAATGGGG TTATGGAAAC TCAAAGGAAG CCCGGAAGAG
  CCAATTTGGT GCAGACAGGA AGTAATCTTG GGGTTTTCCA AGTGACCTAG CAAGAAGAAG
  CAGTGTTGGA CTCCAAGTAA CAAAGCCCAG AGGACCGGGT CAGCCTTGTG TGAGGAAGTG
  Y
  AGGAGCTCAA AGGGCAGAAG CTGGAGACCT GAGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGCGCCTGG TGGGAGGGCA TCTCTGACAG GCTCCACCAC TCCCACTCTG
  GAAAAGCTTT CCAGTACTCT CCAGTCCCTC TGGCTCTTGC AATGGCCTTC TGTAATGGGC
  CACCTGTGCC AGCCTAAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321281102	CHEV_4_117704045	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259037143					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117888637 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598284	regulatory region 598284			683 bp distal
Rr598285	regulatory region 598285			within coordinates
Rr598286	regulatory region 598286			1837 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant