rs259022200 SNP Detail

Summary

• ID
  rs259022200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132293770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAT GTATCTATGT ATGTATGTAC
  R
  TATGTATGTA TCTATCTACC TACCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321334516	CHEV_4_132122374	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259022200					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132293770 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601019	regulatory region 601019	947 bp distal
Rr601020	regulatory region 601020	852 bp proximal
Tssr39389	transcription start site region 39389	1091 bp downstream
Tssr39390	transcription start site region 39390	1863 bp upstream
Tssr39391	transcription start site region 39391	1950 bp upstream
Tssr43688	transcription start site region 43688	1005 bp downstream
Tssr43689	transcription start site region 43689	1032 bp downstream