rs259001708 SNP Detail

Summary

• ID
  rs259001708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28075656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGGGTTG AGGCTGGAGG
  ATTGCCAGGA GTTGCTCGGG GTTCATAAGG ATACCCAGTC TTCCCTTTTT CCCTGCCCTC
  CCCTACAAAC AAACAAAAAG TCCATAAAGG GTGAGAGGGC TCAGCAAGTA AATGCGCTTG
  CCACGAAGGC ATAAGACCTA GTTAGATCCC GGGACCCACT TTGTGGAAGA GACCCGATTC
  Y
  TGACTAACAC TACACATTTA CAAGTCAGGC ATGGTGATCT GAGCTTGTTA TCCCAGCAGG
  AGGTTGCTGA GAGTTCAGAT AAGTTTGAGC TAGGGTCGAC TTTATTTAAA AAAAAAGTTA
  AACTAAAAAA AGTCCTCTAT CAAGTCCGCC CAAGCTGTCT GCGCAGGGTT CAGAGTCCCC
  TAGGGCCCCC GGCTTTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858498	MGP_WTSI_7_29161250	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T	T	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259001708					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858498	MGP_WTSI_7_29161250	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28075656 () rs orientation: forward

Symbol	Name	Function Class
Gm73785	predicted gene, 73785	within coordinates
Gm73803	predicted gene, 73803	659 bp upstream
Rr380568	regulatory region 380568	146 bp upstream
Rr400209	regulatory region 400209	299 bp downstream
Rr644238	regulatory region 644238	169 bp distal
Rr644239	regulatory region 644239	433 bp proximal
Rr644240	regulatory region 644240	1702 bp proximal
Tssr65460	transcription start site region 65460	439 bp downstream
Tssr65461	transcription start site region 65461	294 bp upstream
Tssr65462	transcription start site region 65462	495 bp upstream
Tssr65463	transcription start site region 65463	1255 bp upstream
Tssr65464	transcription start site region 65464	1765 bp upstream
Tssr71489	transcription start site region 71489	647 bp upstream
Tssr71490	transcription start site region 71490	739 bp downstream
Tssr71491	transcription start site region 71491	843 bp downstream
Tssr71492	transcription start site region 71492	899 bp downstream
Tssr71493	transcription start site region 71493	943 bp downstream
Tssr71494	transcription start site region 71494	990 bp downstream
Tssr71495	transcription start site region 71495	1035 bp downstream
Tssr71496	transcription start site region 71496	1386 bp downstream
Tssr71497	transcription start site region 71497	1634 bp downstream
Tssr71498	transcription start site region 71498	1692 bp downstream
Tssr71499	transcription start site region 71499	1785 bp downstream
Tssr71500	transcription start site region 71500	1818 bp downstream
Tssr71501	transcription start site region 71501	1836 bp downstream
Tssr71502	transcription start site region 71502	1876 bp downstream
Tssr71503	transcription start site region 71503	1912 bp downstream
Tssr71504	transcription start site region 71504	1940 bp downstream
Tssr71505	transcription start site region 71505	1956 bp downstream
Tssr71506	transcription start site region 71506	1975 bp downstream
Zfp36	zinc finger protein 36	552 bp downstream