rs258947553 SNP Detail

Summary

• ID
  rs258947553
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:63945796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCGACAA TTTTTTTGCA
  GGAAGGAACC ATTGGTCAAG CCAGACAGGG GTGTCATCTT TCCATGTAAT TTTATCTGTC
  TGGCATGCAG GGAGAGCAAT GGTCCTTATG AAAAATGGGA GTTGTAACCT AAGCCTGCAT
  GATCGACCTT GGGAGGGATT TCGATTGGCT CAGGCCTCCC TTGTCCAAAT TTACCTAGTC
  C
  CTGTCCAGGG AGATAACCCT GGGTGAGCAT TTGTTGAGTA ATGACTTCAT TGGGACTGCA
  CATAATGACT CTCATTTGAG AGAGAATATC TCTCCCCCAC AAATTAATAG GCAGACCCGG
  GACAACATAA GGCTGAATAG AGCCAGAGTT TCCCTCACCA TCTTCCCAAA TCAACAGCTG
  TGAACTCTGG AGAGTATTTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358213183	MGP_WTSI_3_63842297	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258947553					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358213183	MGP_WTSI_3_63842297	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:63945796 () rs orientation: forward

Symbol	Name	Function Class
Rr577614	regulatory region 577614	1248 bp proximal
Rr577615	regulatory region 577615	1524 bp proximal
Tssr29383	transcription start site region 29383	924 bp upstream