rs258923845 SNP Detail

Summary

• ID
  rs258923845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147951225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGAGTAGA GAGAACTGAC TCTCATGAAT TGTCTTCTTA
  CCTCCATACA TTCATGGGTC AGGGCATGTG CTTGCCCTAT ACCCACACAT ATAAGAACTT
  R
  TTTTTAATAT TAATCTGACT CCTTTATCAT ATAGAAAAGA CTAGTGCAGC ATGCTAATTT
  AAAGCTTAAT GACTTGTGCT ATTGTGCAGG GCAGGGGAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321415383	CHEV_4_147240877	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258923845					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147951225 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15282	CpG island 15282			1561 bp proximal
Miip	migration and invasion inhibitory protein			Intron
				Noncoding-Transcript-Variant
Rr398850	regulatory region 398850			1824 bp upstream
Rr604509	regulatory region 604509			within coordinates
Rr604510	regulatory region 604510			766 bp proximal
Rr604511	regulatory region 604511			1296 bp proximal
Rr604512	regulatory region 604512			1705 bp proximal
Tssr44551	transcription start site region 44551			1701 bp downstream
Tssr44552	transcription start site region 44552			1840 bp downstream
Tssr44553	transcription start site region 44553			1863 bp downstream