rs258917260 SNP Detail

Summary

• ID
  rs258917260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152624623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaaatcctc ctacctctgc ctcccaagtg
  ctgggattaa aggtatgcgc caccactgcc cagcCTGGTT TAACATTCTT TAGGACATGA
  TTTAGTGAGT ATCTAACCCA CCACTGAAGT TGCATGCTAC ACACAGGATG ACCAACAAGT
  Y
  TGTGGGGCTT GTTTCCTCCT TTTCCTGCTT GACTAGACCT ATGGCATGCC AAGTCCTTTT
  TTTATTATAT AATATCTCAA AAGCTTATAA AACTACCACA TTTTTTAGAT TTACTTAAAA
  AAAAAATaga taagatctta ctagccctgg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320067877	CHEV_1_154596002	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258917260					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152624623 () rs orientation: forward

Symbol	Name	Function Class
Apobec4	apolipoprotein B mRNA editing enzyme catalytic polypeptide-like 4	1679 bp upstream
Gm28792	predicted gene 28792	within coordinates
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	Intron
Rr420531	regulatory region 420531	1362 bp proximal
Rr420532	regulatory region 420532	1690 bp proximal
Tssr9415	transcription start site region 9415	1651 bp upstream
Tssr9416	transcription start site region 9416	1655 bp upstream
Tssr9417	transcription start site region 9417	1682 bp upstream