rs258902993 SNP Detail

Summary

• ID
  rs258902993
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95435506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGGTGC TATGTAGTGT
  TGCCATACAC CCCCCACCCC ACCCACCCAC ACACTATGTT GTGGTGATTT AATTTTTTTA
  TTATTTTTGG TTTTTCGAGA CAGGGTTTCT CTGTGCAGTC CTGGCTGTCC TGGCGCTCAC
  TCTGTAGACC AGGCTGGCCT CAAACTCAGA AATCCACCTG CCTCTGCCTC CCAAGTGATG
  R
  GATTTCAGGG ATGTGCCACC ACTGCCCGGC CAGTGATTTA AATATTGAAA TGGCCACTTA
  AGATAGACAC ATGTCCTCAT TAGAAGGGTT TCTTTAAGAA AGGAGGAAGG GGGGCTGGAA
  AGATGTCTCA ACAGTTAATA GCACTGTTTG CTCTTCCAGA AGTCCTGAAT TCAATCCCCA
  ATGACTACGT AGTGGCTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358902876	MGP_WTSI_3_95332117	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258902993					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358902876	MGP_WTSI_3_95332117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95435506 () rs orientation: forward

Symbol	Name	Function Class
Ctss	cathepsin S	Intron
Rr397840	regulatory region 397840	1292 bp downstream
Rr580967	regulatory region 580967	1399 bp distal
Rr580968	regulatory region 580968	920 bp distal
Rr580969	regulatory region 580969	1667 bp proximal
Tssr30563	transcription start site region 30563	1398 bp downstream
Tssr30564	transcription start site region 30564	1384 bp downstream
Tssr30565	transcription start site region 30565	1324 bp downstream
Tssr30566	transcription start site region 30566	1306 bp downstream
Tssr30567	transcription start site region 30567	1233 bp upstream
Tssr30568	transcription start site region 30568	1986 bp upstream
Tssr34488	transcription start site region 34488	1325 bp downstream