rs258894936 SNP Detail

Summary

• ID
  rs258894936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:39010425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGCTGCT TCTGGGACCT
  GGCGCTGAGG GAGCACGCAG CGGTCAACCA GGTACCCGCC CCTCCTGCCT GTCACCCGGG
  CCTGCCAGAG TTCACATGAG GTTTGGGGAG GGGTGCTTTG GATCCTGCTA CGGGGCCCTG
  GCTGACCTGG GACTTGCTGT GTAGATCATG TTCTGGAATT TGCAGCGATC CATCTGTCTC
  Y
  GCATCCCCAG GACTACCACT ATCATGCCCA GATTACTTGG GCTTTTTAAT CAGTACCATA
  AATTGCATAG GATCTTCTCA TACCGGTCGT GGCTAGTTTC TTTTTAAACG TGTTGCTGTA
  AGTCACAGGC AGAAGGCACT TGTCAGGAGT TTGGTCTTAA GTTTCCCTGA TCTTTAGCAG
  TCTCCTCCTC CTCCTCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380092471	MGP_WTSI_10_38854235	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	T	C	T	T	C	C	T	T	T	C	C	T	C	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258894936					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	T	C	T	T	C	C	T	T	T	C	C	T	C	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380092471	MGP_WTSI_10_38854235	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:39010425 () rs orientation: forward

Symbol	Name	Function Class
Fam229b	family with sequence similarity 229, member B	515 bp upstream
Rr429936	regulatory region 429936	592 bp distal
Rr429937	regulatory region 429937	396 bp distal
Tssr92973	transcription start site region 92973	449 bp downstream
Tssr92974	transcription start site region 92974	398 bp downstream
Tssr92975	transcription start site region 92975	363 bp downstream
Tssr97329	transcription start site region 97329	517 bp upstream
Tssr97330	transcription start site region 97330	502 bp upstream
Tube1	tubulin, epsilon 1	Intron