rs258848410 SNP Detail

Summary

• ID
  rs258848410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117162669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT CCCTCCCTCC CTCCCTCCCT
  Y
  CCTTCCTTCC TTCCTTCCTT CCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	RIIIS/J
ss640493033	FVB_NJ_4_116978077	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	C	T	T	C	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	RIIIS/J
rs258848410					SNP	C	T	C	T	T	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640493033	FVB_NJ_4_116978077	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117162669 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14659	CpG island 14659			682 bp distal
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr598114	regulatory region 598114			473 bp distal
Rr598115	regulatory region 598115			74 bp proximal