rs258843001 SNP Detail

Summary

• ID
  rs258843001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117381877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGGATTTT CAAACTGGGG AACCAGCATG
  AGGTCAAAAT AACCCAGGGT CCATTCCAGA AGGTCAACTG CATGTCCTCG TTTGCCCTAC
  ACAGGACCAG TTTAGGTACG TGCTAGCACA ATCATGTTCA AAACTGCGGC CTTTTTGGTT
  Y
  GGAAGAGATT GTGCCTGCCC AGAGGCAAAT GCAGGTTTGT CTGGCCCCCT GTCTCAGGTA
  CCTTAGGACA TCGTTGGTCC TCATGGTGAT AGTTATGGCA AGTCTGTGTG GACAAAGCAA
  GGGCTACAGG TCTACAAGGT GTATGGCCCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321922286	CHEV_6_117354934	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258843001					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117381877 () rs orientation: forward

Symbol	Name	Function Class
Rr637316	regulatory region 637316	1852 bp proximal