rs258818212 SNP Detail

Summary

• ID
  rs258818212
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:15637755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTTCCCC TTTGAGTTGA
  ATTTTTTTTT AAAAAAAATG TAGCTTCATG GAATTTGCTG AAAAATTATG ATATGCTACA
  GATTGGATAG ATCCCAATAA ACTGAACTCA ATTCTTCTCT TTTTATTTTC CCAAGGGTTT
  ATATTCTTGT GGAATTACAG CCCACCATCT ATAGAACCAC AAAAAAAAAA AAAAAAAAAA
  M
  AAAAACACAT TTACCAATTG GCTTCATGTA CAGTGATTTT TCTACATTTT TGCATATTCC
  ATCTGGCAAA AATTAATCCA AACAATTAGG ACTTTTCACT ATAACACCAA ATAAGTACAA
  GGACTGTCAG CTCCACATTT TGTTATGACT GTTTAATATT TATCTCCTAA AAGTGTCATG
  TTTCTCACTC TGTCACATAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	DBA/1J	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss367483046	MGP_WTSI_6_15587756	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	DBA/1J	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs258818212					SNP	A	A	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367483046	MGP_WTSI_6_15587756	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15637755 () rs orientation: forward

Symbol	Name	Function Class
Gm36352	predicted gene, 36352	370 bp downstream
Gm44039	predicted gene, 44039	within coordinates
Rr626670	regulatory region 626670	818 bp proximal
Rr626671	regulatory region 626671	1638 bp proximal