rs258811242 SNP Detail

Summary

• ID
  rs258811242
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67514167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTGAACAA CTAGCTTATC CTGTCCAGCT
  TCCACCCACC TTGCCTCAGA GAAAGATCTA AAGCACAAAT GTGTGCACAT CTTCTTTTTT
  GTTGAGAATA ctctctctct ctctctctct ctctctctct ctctctctct ctctctctct
  S
  tGTGTGTGTG TGTGTATGTA CAGGTAAGGA GACATCTTGG CTCTAAGAAC AGAGTTCATA
  TTTTATGAAC TGGTGCACAG TGCCAACTGC TGTCATAGTT ACTGCCATCA TCATTGTATC
  CCTGCAAACT TCTCAGACGT CCACCAGCCT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812350	CHEV_6_67487177	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258811242					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67514167 () rs orientation: forward

Symbol	Name	Function Class
Gm42889	predicted gene 42889	within coordinates
Rr631669	regulatory region 631669	1928 bp distal
Rr631670	regulatory region 631670	1377 bp distal
Rr631671	regulatory region 631671	1107 bp distal
Rr631672	regulatory region 631672	1204 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	1387 bp upstream
Tssr61256	transcription start site region 61256	1957 bp upstream
Tssr61257	transcription start site region 61257	1486 bp upstream
Tssr61258	transcription start site region 61258	1381 bp upstream
Tssr61259	transcription start site region 61259	1313 bp upstream