rs258796571 SNP Detail

Summary

• ID
  rs258796571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153082891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTGCAGA AAAGCCTGAA
  AGCAGGTTTA TGAAAGTCTG GAAAACGAAA GAGCTTAGAG CAGACTATTT GGAGCAGGAA
  AAGGAAGGTT ATGTGGGTCG GGGTAGGCGT GTCCGAGGGT GGGAACAGGT GCAGCTTATC
  TATGCCCCCC AGACCGCGAT CCCGAGGAAG GTTAGCTGCG TGTTATCTGG GTCTCCAGGG
  R
  GTCTGGGGGG TCCAGACTAG GGGACCCTCA GGCTGAGTTT CCAGGTCTAG GAATGGAGGG
  AGCCTGAAAG GCTTGTTCCG GTCCCCTGGG CACAGGTCTG AGGTCCGGGG AACGTTTTCG
  TCACTACGGG GCCTATCGGG GGCCCGGCTA GAGCAAAGGG GGCCCCTACT CAGGGGTGTG
  GGCGACCGCG CTGGGCGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356168004	MGP_WTSI_2_153066707	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258796571					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356168004	MGP_WTSI_2_153066707	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153082891 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	within coordinates
Plagl2	pleiomorphic adenoma gene-like 2	Intron
Pofut1	protein O-fucosyltransferase 1	562 bp upstream
Rr567588	regulatory region 567588	within coordinates
Rr567589	regulatory region 567589	445 bp proximal
Rr567590	regulatory region 567590	985 bp proximal
Tssr20880	transcription start site region 20880	45 bp downstream
Tssr20881	transcription start site region 20881	28 bp downstream
Tssr20882	transcription start site region 20882	481 bp upstream
Tssr20883	transcription start site region 20883	531 bp upstream
Tssr20884	transcription start site region 20884	636 bp upstream
Tssr26895	transcription start site region 26895	372 bp downstream
Tssr26896	transcription start site region 26896	387 bp downstream
Tssr26897	transcription start site region 26897	431 bp downstream
Tssr26898	transcription start site region 26898	526 bp downstream
Tssr26899	transcription start site region 26899	738 bp downstream