rs258787918 SNP Detail

Summary

• ID
  rs258787918
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:167262155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTCTCTC TCTCTCCATG
  ATTCTAGCTT TTGTCAAGTT GACAAAGAAT CCAGCAGTGT GTGTGCATGT CATATCCATG
  TGTGGAGAAT TTGCAAGGGT CAGTTCTCTC TCACCATGTG TGTCACAGAA ACTAAGCTAA
  GGTCATTCGG CTGGTGGCAT GAGCTGTTAC CCAGAATCAT CTCAGCAGTC TTAGTTTTAA
  Y
  ATCCATATAT GAAAATTTTT TTACGTGGGC AGCCTTCTTG GCACACATTA ATTGTGCTGG
  AATTTTTGTT CTCAGCTAAT GTGTGAGGCT TCCCTTGTTC GTTTAATTTT ATCTTGCCTT
  ATACCTGGCT TTCCTAGTTC CTTTGTATAG TCTGAACCCC ACAAGGTACA TCTCAGCATA
  CAGTAGGTCT CTACAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356504886	MGP_WTSI_2_167245735	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258787918					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356504886	MGP_WTSI_2_167245735	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167262155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12739	CpG island 12739	883 bp proximal
Gm74973	predicted gene, 74973	992 bp downstream
Rr397507	regulatory region 397507	1211 bp upstream
Rr570576	regulatory region 570576	1188 bp distal
Rr570577	regulatory region 570577	598 bp distal
Rr570578	regulatory region 570578	850 bp distal
Rr570579	regulatory region 570579	808 bp distal
Rr570580	regulatory region 570580	278 bp proximal
Rr570581	regulatory region 570581	1234 bp proximal
Rr570582	regulatory region 570582	1497 bp proximal
Slc9a8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	Noncoding-Transcript-Variant
Tssr21807	transcription start site region 21807	1457 bp upstream
Tssr21808	transcription start site region 21808	1471 bp upstream
Tssr21809	transcription start site region 21809	1802 bp upstream
Tssr27774	transcription start site region 27774	1216 bp downstream