rs258773956 SNP Detail

Summary

• ID
  rs258773956
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108936079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCCCAGCT TCCAAGAGCA GGGACAATGC
  CCAGCAAAAC CAAAGCCGAG CATCTCTCTG AGAAGCACAG GTGAAGCGAA TGCCTTCTGA
  GCGCAGGTCT GACTTACACT GTTCTCATGT GAATGTTCAC AGGGACTCAT CCACTCTGAA
  T
  Ttattattat cctcatttta ccaaccagga aactgagaat tgcacaggag aagaaagttg
  accaaggtca tccaacaaaa ctgactcaga actcaaTGGA TCTGAGGTTC TAGAATTCAG
  ACACCTGAGC CATAGCAACT GCCTATACAC                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321253494	CHEV_4_108751487	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258773956					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108936079 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32581	predicted gene, 32581			147 bp upstream
Osbpl9	oxysterol binding protein-like 9			Intron
				Noncoding-Transcript-Variant
Rr597258	regulatory region 597258			873 bp proximal
Rr597259	regulatory region 597259			1285 bp proximal