rs258756010 SNP Detail

Summary

• ID
  rs258756010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121130145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTGCCGT CCCCCTTTGA
  CCTGCTTGAG CCCCCCACCT CAGGAGGCTT CCTCAAGCTC TCCAAGCCTT GCTGTTACAT
  CTTCCCTGGT GGCCGTGGGG ACTCTGCTCT CTTTGCTGTC AATGGCTTTA ACATCCTGGT
  GGACGGCGGT TCTGACCGCA AGTCCTGCTT CTGGAAGCTG GTGCGGCACC TGGACCGCAT
  Y
  GACTCGGTGC TGCTCACGCA CATTGGGGCT GACAATCTGC CAGGCATCAA TGGGCTCCTG
  CAGCGCAAGG TGGCAGAGCT AGAGGAGGAG CAGTCCCAGG GCTCCAGCAG CTACAGCGAC
  TGGGTGAAGA ACCTCATCTC CCCTGAGCTC GGAGTCGTGT TCTTCAATGT GCCTGATAAG
  CTCCGGCTGC CCGACGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss355464419	MGP_WTSI_2_121125400	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs258756010					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355464419	MGP_WTSI_2_121125400	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121130145 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12154	CpG island 12154			within coordinates
D2Dcr65	DNA Segment, Chr 2, Derry C. Roopenian 65			1912 bp distal
D2Mit445	DNA Segment, Chr 2, Massachusetts Institute of Technology 445			1931 bp distal
Map1a	microtubule-associated protein 1 A			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
Rr563802	regulatory region 563802			1178 bp distal
Tssr19741	transcription start site region 19741			1056 bp downstream
Tssr19742	transcription start site region 19742			163 bp downstream
Tssr19743	transcription start site region 19743			699 bp upstream
Tssr19744	transcription start site region 19744			969 bp upstream
Tssr19745	transcription start site region 19745			1278 bp upstream
Tssr25921	transcription start site region 25921			1003 bp downstream
Tssr25922	transcription start site region 25922			1601 bp downstream