rs258734804 SNP Detail

Summary

• ID
  rs258734804
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62539256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCACTTTT ATTTCTTATA
  CATAGGAATG GGGATCAGGA GTAGGGATGA AGGTAAAATA TATCCAGATT TGTGTAGTGT
  CCAAGATGGA GGGACCACAC GAATTGCCCT GACTGTAAAA AATACAGAGA AGACCCTCTT
  TAGAATCTGG AGCTTAACTC TATAGTGTAT AGGTCACAGG CAGAGGCCCA TTTCCCCCCC
  M
  CCCCCACCCC CCCCCCGGCA CCTGCCTCCA TCACTGGGGA CCCAGATGTT CTTTCTAACA
  TTTTCCTGCA CCGTTGACCT CAATCTATGC TCCCTACTTT CCTGAAGTTA GTCCCTGTGG
  CAAGAACATT TAGATGTTTA TAAACATAAG ACAGGGTGAG CGCCGGATAG GAGGTAATGA
  AATCCCAGGT GTTCTTGGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321142786	CHEV_4_62282053	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258734804					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62539256 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rgs3	regulator of G-protein signaling 3			Intron
				Noncoding-Transcript-Variant
Rr593362	regulatory region 593362			1427 bp distal
Rr593363	regulatory region 593363			833 bp proximal
Tssr37501	transcription start site region 37501			1489 bp downstream
Tssr37502	transcription start site region 37502			1350 bp downstream
Tssr37503	transcription start site region 37503			1300 bp downstream
Tssr37504	transcription start site region 37504			1279 bp downstream