rs258729800 SNP Detail

Summary

• ID
  rs258729800
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114328488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTCATG CTTGCATGAC
  CTATAACTGA GCTTCTGGTG GTAGAGACTG TGTAACCACT TCTATACCCA GGGCATTGGG
  CACAAAGGAC TATACCTGCC TAGTTCACTT CTGATTCTCC AGCATCCCAC CTACATCCTA
  GTATACTCAG GGTCCCGTCA GTGCACACCA GAAAAGAAAT GGAGTGGAGT GGAGAGATGG
  M
  TCAGCAGTTA AGAACACTAG CTGTTCTTCC AGAAGAACTG AGTTCAATGG AGTATTCTTA
  CAAGCCCTGC ATGTTCACCT CATGGCCCTT GCAGGAAAGG TTTATCTCCT GTCACCTATT
  CTCATCCTCC TACACTGAGA CTCTGTAGAG GGGCCAGGTT CCTATCCCCT GAGTAGCTTG
  TCTTGGGAGG AGCCCAGGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321274175	CHEV_4_114143896	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258729800					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114328488 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597579	regulatory region 597579			762 bp proximal
Rr597580	regulatory region 597580			1050 bp proximal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant
Tssr42814	transcription start site region 42814			386 bp upstream