rs258725429 SNP Detail

Summary

• ID
  rs258725429
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54478089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCCTCTT CCGGGACGAG
  TTTGAGTCAC GTTGACAATA AAAAACAACA ATATGGAGCT TCCCTGAGAA AATGGAAAAC
  TTGTCTCATA TGATTTGGTA GCTATTATGA AGCAAGTCAA ACTCTATTTC CTCTTTAATA
  CATGTTTTTC TTTATGTCTA TGACCGCTTG CCTGCCATGC ATGTCTGTGC ACCATGTACA
  K
  GCAGTGCCTG TCGAGGCCAG AAGAGGGCGA TAGATACCCT ACCCAGTTCT CTGTAAGAGC
  AGCCCCTCTC CTGGCCCAAC CTATGTTATT TTTGTACGCA CAGAAAAATC ACTGAAAAGT
  CTAAAAAGTC GAACCCTCCA TTAAATCCCA ACCAGGTTGG TATTCTTTTA AGACTAAGGT
  TTGGCGCTTG ATCAGCAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771961	CHEV_3_54374590	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258725429					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54478089 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	53 bp upstream
Rr576809	regulatory region 576809	13 bp proximal
Tssr29130	transcription start site region 29130	751 bp downstream