rs258723107 SNP Detail

Summary

• ID
  rs258723107
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30068525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATATAAG AATCCATGTG
  TTTATTTGTA GATAAATTTG GAAAAAAAAA TGTTAAACCC ACCGCTTAAT TGAGAATAAA
  TGCTTTTGAT GAGAAAACTC CATTTATAAA AGCAAATAGA AAGATACAGC TCACCTACCC
  ACCAAGAGAA GACAGAAACA CCTCCAGGAC AACCACCCCC AACCCCCACT AGGCAAGAGA
  M
  CTGCCTCTGA GCTAAATCGC CAGCCCTCAG ATCCAATTTA TTCTCAACTC AACAATGGAA
  AATTTAGTAA AATGCCTAGG TCTAGGAACA GGTACTTGGG AGGGGTGGAG CCAGCTCACA
  GGCTTAGAAT GTGTGCTGAC ATTAAACTTT TATCTATGAA TCAGGACTCA CAGTACCACC
  CACATTTCTT TCTCTCCAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357407780	MGP_WTSI_3_29913298	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258723107					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357407780	MGP_WTSI_3_29913298	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30068525 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13032	CpG island 13032	1783 bp distal
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46	772 bp distal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1	651 bp distal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3	901 bp distal
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574701	regulatory region 574701	1987 bp distal
Rr574702	regulatory region 574702	1231 bp distal
Rr574703	regulatory region 574703	635 bp distal
Rr574704	regulatory region 574704	787 bp proximal
Rr574705	regulatory region 574705	1052 bp proximal
Tssr32873	transcription start site region 32873	1465 bp upstream
Tssr32874	transcription start site region 32874	1356 bp upstream
Tssr32875	transcription start site region 32875	1340 bp upstream
Tssr32876	transcription start site region 32876	1227 bp upstream
Tssr32877	transcription start site region 32877	1202 bp upstream
Tssr32878	transcription start site region 32878	1130 bp upstream
Tssr32879	transcription start site region 32879	1116 bp upstream
Tssr32880	transcription start site region 32880	1036 bp upstream
Tssr32881	transcription start site region 32881	1007 bp upstream
Tssr32882	transcription start site region 32882	977 bp upstream
Tssr32883	transcription start site region 32883	11 bp downstream