rs258712378 SNP Detail

Summary

• ID
  rs258712378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54537363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATATTTAG TCTGTCATCT
  CCCAAACATC ACTACCTGAT CATGACTATG TTTAATAAAA AGTTGGCAAT GAACATGTTT
  TCTTTCCTTT TCTTTCTTTC TCTCTTTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTT
  TTTTTTTGGT TTTGGTTTTC TTATTTTGTT TTGTTTATTT TTTGGGGGGG GTGTTGTTTT
  R
  TTGTTGTTGT TGTTGTTGTT TTGAGACAGG GTTTCTTTGT GTAGCCCTGG CTGTCCTAGA
  ACTTGTTCTA GAAAGCAGGC TGGGCTTGAA CTCACAGAGA TCCTCCTGCC TCTGCCTCCC
  AAATCCTGGG ATTAAAGGCA TGCCCCACCA CTGCCCACCT AAAGATAAAG ATTCTAATTC
  TATATGCATT ATCAGTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772255	CHEV_3_54433864	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258712378					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54537363 () rs orientation: forward

Symbol	Name	Function Class
Rr576819	regulatory region 576819	406 bp proximal