rs258696766 SNP Detail

Summary

• ID
  rs258696766
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170161611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTTTTT TTTTTTTTTT
  TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTGGCGTTGG TGGTGGACTG AGTGACAATC
  AGTGAAATCA CTTAGGTTGT TTTTCTCTTC TTCGTTGGGT TTGATAGACG GTGGGAGAGG
  GTCAGAGGAG AAGGGGAGGG ATGGGGAGAG AGGGAGGAGG GAGGGGCGGG AGGCGGGGGG
  S
  GAGGAAAACG TGCTAACTTC TCCAATCCTA CAAGACAAAG GTTTGGAGAA AGCCGCACTG
  AGTGACCCAG CAGAAGGAAT CCAGGAATGT CCGCTGGAAT CTGACTGTTG ATTCCAGCGC
  CATGCAGAGA ATCTAGGCTG GTAGGAACAT TCTTTGTCCT ATCCGACATA ATAACTCCAA
  CCAACACGGA AAAGAAAGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356578668	MGP_WTSI_2_170145191	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs258696766					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356578668	MGP_WTSI_2_170145191	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170161611 () rs orientation: forward

Symbol	Name	Function Class
9430096G21Rik	RIKEN cDNA 9430096G21 gene	459 bp upstream
Gm34542	predicted gene, 34542	within coordinates
Rr397537	regulatory region 397537	25 bp downstream
Rr571405	regulatory region 571405	1461 bp distal
Rr571406	regulatory region 571406	within coordinates
Rr571407	regulatory region 571407	302 bp distal
Rr571408	regulatory region 571408	35 bp proximal
Rr571409	regulatory region 571409	1853 bp proximal