rs258695520 SNP Detail

Summary

• ID
  rs258695520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:4047824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGGCCC ACCCACCGCC
  TCCTTGGTCC TTTCCTATCT ATGATCCCTG AAATTAATTA CCCTTGTGCT TGTGGAGGGT
  TTAAACAGGC AGCCAGTGGA ACCCAGGAGT TAATGAGGTT CTGGGGGGGG GGGCTGTTAG
  CCTTCCTTCC AGTGCTGACT TGGGTTACTC CTGAGATTGG GGGGGGGGGG GGACGAGAGA
  Y
  TCAAGGCTTA TGACAAAAAG TTTCAAAGAG CTTTGGATAC CCATCACATC TAGTGGCCTG
  CTACCTTGCA ACCATCATTA CAATCATGGA GGTTTGGTCC ATGTTCATTT AGGAGCAAGT
  TTCTCCCCAG CAGCTGGCTT CCCTGAGTAT GACATCCAAT CGCTTCACTT CTTTCTAAGT
  TCTTCCCTGC CACCATCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382253171	MGP_WTSI_11_3997827	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	T	T	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258695520					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	T	T	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382253171	MGP_WTSI_11_3997827	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4047824 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2504	CpG island 2504			773 bp distal
Gm72847	predicted gene, 72847			769 bp downstream
Rr369115	regulatory region 369115			345 bp downstream
Rr441726	regulatory region 441726			1889 bp distal
Rr441727	regulatory region 441727			61 bp distal
Rr441728	regulatory region 441728			155 bp proximal
Rr441729	regulatory region 441729			492 bp proximal
Sec14l2	SEC14-like lipid binding 2			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr100092	transcription start site region 100092			919 bp downstream