rs258679309 SNP Detail

Summary

• ID
  rs258679309
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15745754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG AGAGAGAGAG AGAGAGAGAG
  M
  GAGCATGAAG TGGTTTTGAT TTAAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321752102	CHEV_6_15695755	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258679309					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15745754 () rs orientation: forward

Symbol	Name	Function Class
Mdfic	MyoD family inhibitor domain containing	Intron
Rr399574	regulatory region 399574	within coordinates
Rr626681	regulatory region 626681	1677 bp distal
Rr626682	regulatory region 626682	17 bp distal
Rr626683	regulatory region 626683	169 bp proximal
Tssr1783	transcription start site region 1783	452 bp upstream