rs258674588 SNP Detail

Summary

• ID
  rs258674588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100252080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGAGGAGG GCTTGCTGAA
  GGCTGATGGT GCTGGAGTTT GGCAGAAATC TTTGTAACTG TGACTGGAAA GGCACAGACT
  TCAGTGTCAT ACACATTTAC CGGTGCTTTG TGTAGGCCAG GCTGTGTGTA CTAGGCTCTG
  TGGAGAGTAA GGCTGGGCTG GGACTGAGTT AGGGCTACAC AGGAAGGTAA GAATATCTGT
  Y
  GCTTTTCAGG AGTGTTCTGC CCAGTTTGGG AACAGGCCTC TCAACGGGTC ACTGTAGTAG
  AACAGAGTTT GTGCCGGATG CTGGAGAGTG TATCCCTTCT TGTGGATCAC TGGTGACTTT
  GGGAGAGCAT CTTCCAGGAG GAAAGGCCAC ACAGAAATGA AAGGATGAAG ACATTAAACC
  ATGTGAAGGA AAGCGAGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321227036	CHEV_4_100067488	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258674588					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100252080 () rs orientation: forward

Symbol	Name	Function Class
Gm35760	predicted gene, 35760	within coordinates
Ror1	receptor tyrosine kinase-like orphan receptor 1	Intron
Rr595987	regulatory region 595987	439 bp distal
Rr595988	regulatory region 595988	354 bp proximal