rs258609585 SNP Detail

Summary

• ID
  rs258609585
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106944534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCATTGT CATCTTCTGC
  TTGGAGACGC TTCCCGAGTT TCGCGATGAG AAAGACTATC CCGCCTCCCC GTCGCAGGAC
  GTGTTTGAGG CTGCCAACAA CAGCACGTCG GGGGCCCCTT CTGGAGCCTC CAGCTTCTCG
  GACCCCTTCT TCGTGGTGGA GACCTTGTGC ATCATCTGGT TCTCCTTTGA GCTTCTGGTG
  M
  GGTTCTTTGC TTGCCCCAGT AAAGCCACCT TCTCCAGAAA TATCATGAAC TTGATAGACA
  TTGTGGCCAT CATTCCTTAT TTTATCACTC TGGGCACTGA GCTGGCTGAA CGACAAGGTA
  ATGGGCAGCA GGCCATGTCG CTGGCCATCC TGAGAGTCAT CCGCCTAGTA AGGGTTTTCC
  GCATCTTCAA GCTCTCCCGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359136876	MGP_WTSI_3_106840136	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258609585					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359136876	MGP_WTSI_3_106840136	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106944534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13669	CpG island 13669	within coordinates
Gm56792	predicted gene, 56792	329 bp downstream
Kcna3	potassium voltage-gated channel, shaker-related subfamily, member 3	Coding-Synonymous
Rr397927	regulatory region 397927	985 bp upstream
Rr397928	regulatory region 397928	1616 bp upstream
Rr582885	regulatory region 582885	1039 bp distal
Rr582886	regulatory region 582886	527 bp distal
Rr582887	regulatory region 582887	358 bp proximal
Rr582888	regulatory region 582888	1080 bp proximal
Rr582889	regulatory region 582889	1749 bp proximal
Tssr31148	transcription start site region 31148	1037 bp downstream
Tssr31149	transcription start site region 31149	1709 bp upstream
Tssr35008	transcription start site region 35008	825 bp downstream
Tssr35009	transcription start site region 35009	1088 bp downstream