rs258603893 SNP Detail

Summary

• ID
  rs258603893
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100690253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggaatgtga aggtggggag gtgagggtag
  gggaacaccc tcatagaagc aggggggagg gggatgggac agggggctgg ggggggcgag
  gtggggatcc agaaaggggg tagcatttga aatgtaaata aataaaatac ccaataaaaa
  R
  gagaaaACCT AAACATGTGT Ttaataataa taataataat aataataata ataataataa
  taataataat TTTGTCTGTC AAGCCCTCCT CAGAAGTTTT GACTCTGGAG TAAATAGGAA
  AGGAATGTAT GCAGTGCAAC CCAAGATTGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321228027	CHEV_4_100505661	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258603893					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100690253 () rs orientation: forward

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	652 bp proximal