rs258530516 SNP Detail

Summary

• ID
  rs258530516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62421114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACAGT TTGTTGACTG
  CAATAACCTA GACACTTGGT TTTAAGATAG GGTCTCACTA TGCAGGCAAA CGGGTCCTGA
  GCATCTTCCT GCCTCAGCCT CCCAAGTGCT GGGATAATGG GCGTGCCACC GCCGTGTCTG
  TCTAACCTAG TTTCTCTCTG TAAAAAAACA AAAAACAAAA AACAAACAAA CATTTAAAGG
  R
  AAGAAGAGTT TCCCTTTAAA TGCGGTTTTC ATAACTGAAA TACACGTTTA TATTCAAAAG
  TACCGTTGAA AGCAAAAAAG CAAAGCTTTC CTCTCAACCT AGTTGATTCG TGAGGTGCCA
  AGTAAGCACC TGTATTCTGT GTCTGACGCG TGGATAGAGC AGGAAAATGT CAGTTTCCTG
  CCTACGCGAA CATGGGAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321142488	CHEV_4_62163911	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258530516					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62421114 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14361	CpG island 14361			367 bp distal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr593324	regulatory region 593324			1655 bp distal
Rr593325	regulatory region 593325			612 bp distal
Rr593326	regulatory region 593326			111 bp distal
Tssr42008	transcription start site region 42008			695 bp upstream
Tssr42009	transcription start site region 42009			651 bp upstream
Tssr42010	transcription start site region 42010			617 bp upstream