rs258524285 SNP Detail

Summary

• ID
  rs258524285
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132648458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAAATATA TCATGAATAA GCTCTAGATT
  GGTCGTTAGC TCTCTAGGTA AGAGTCCAGC TGGTCCGTCT GCTGTTGTGG GATAATGAGA
  AGGATCACTT GTGATACGAA GGCAAAAGAT TAAAGCTGTC TTGTTTATTG AACTTCCTTT
  W
  aaaaaaaaaa aaaaaaaaaa aaaGagccgg gaggtggtgg cacatgcctt taatcccagc
  actcaggagg ccgagttcag gattttctga gttcgaggcc tgcctggtct acaaagtgag
  tttcaggaca gccagggcta tacagagaaa                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321337427	CHEV_4_132477062	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258524285					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132648458 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14977	CpG island 14977	835 bp proximal
Fam76a	family with sequence similarity 76, member A	Intron
Gm69717	predicted gene, 69717	within coordinates
Rr398546	regulatory region 398546	1532 bp upstream
Rr601111	regulatory region 601111	478 bp proximal
Rr601112	regulatory region 601112	1336 bp proximal
Rr601113	regulatory region 601113	1355 bp proximal
Rr601114	regulatory region 601114	1581 bp proximal
Tssr43726	transcription start site region 43726	within coordinates
Tssr43727	transcription start site region 43727	1340 bp downstream
Tssr43728	transcription start site region 43728	1400 bp downstream
Tssr43729	transcription start site region 43729	1443 bp downstream
Tssr43730	transcription start site region 43730	1458 bp downstream
Tssr43731	transcription start site region 43731	1473 bp downstream
Tssr43732	transcription start site region 43732	1480 bp downstream