rs258519367 SNP Detail

Summary

• ID
  rs258519367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151825546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAACCAA CCAAAGAGTA
  CACAGGGGGT ACCCATGGCT CCAGCTGGAT ATGTAGCAGA GAACTGCCCT ATCTGGCATC
  ACTTTGAGGG GAACCCCTTG GTCCTGTGGA GGCTTGATGA CCCAGGAGAG GGGAACGCTA
  GAGCATTGAG GCAGGAGTGG GTAGGCGAGT TGGGGAGCAC CTCATAGAGG CAGGGGGAGG
  R
  CATAGGGGGC TTGTGGGGGG GGGACTGGGA AGGGGAACAA CATTTGAACT GAAAATAGAA
  TAACCACTTT TTAAAAAAGA AAAAAAGAAT CAAGGAAAAG ATGCAAACAC CAGTGTCTTG
  GCTCAGAGTT TTTGTCTTCC CTTCATCGTA TTTCAATCAC ACATCCAGTA AGCGTTACTA
  CTGTTAGTAA GATTAGTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028141	CHEV_3_151782873	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258519367					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151825546 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587460	regulatory region 587460			197 bp proximal
Rr587461	regulatory region 587461			1663 bp proximal
Tssr1098	transcription start site region 1098			187 bp downstream
Tssr32394	transcription start site region 32394			401 bp upstream