rs258503219 SNP Detail

Summary

• ID
  rs258503219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59552004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTCCAAG ACAGCCAGGG
  CTATAAAGAG AAACCCTGTC TCGAAAAACC AAAAAAAAAA AAAAAAAAAA GTCTATGATT
  CAAAGACTAT AACCCTGAAT AAAATTAACA AAACTGTACT TTATTTCCTA GACAAGCCCA
  GCTTTATAAC AGAAACCTAG AGAACTGAAA ACAGTTTATA AACAGAAGAC AAAGTGAAAC
  R
  TCCCCTTCTC CATGCCCCTT TGTCCTAAAT TCAAAGACTT TATGGGATGA TCCCTTTGAG
  TTTGTGTGTC ACTCTGATTC AAAACAGTAG ACAGGGCCTG GGAGATGACT CAGTCAGAGA
  GACGGCTGTT TTACAGTCAT GATGGCCTCA TCAAGCCAAA TCCTGGAGCT CCAGGCTCAG
  TCAGAGACCT TGTCTCAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141177	CHEV_4_59564876	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258503219					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59552004 () rs orientation: forward

Symbol	Name	Function Class
1700018M17Rik	RIKEN cDNA 1700018M17 gene	within coordinates
D4Mit44	DNA segment, Chr 4, Massachusetts Institute of Technology 44	508 bp proximal
Rr593083	regulatory region 593083	1966 bp distal
Rr593084	regulatory region 593084	1519 bp distal
Rr593085	regulatory region 593085	763 bp proximal