rs258489034 SNP Detail

Summary

• ID
  rs258489034
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75878104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTAGAC AATAAAAGCT
  TTGGGAGCAA ATAGAGACAT TTTTGGGACT CTACTAACCA TTAATACCTG TTAATGGGAG
  AGGCCAGAGA TGTGGTTAAA CAGCGTTCAA CACACAGGAG ATGCCAGTCA GAGACCTACC
  TCTCCTGAAG AAGTGAGGAA CCCTGCACTG AACTGTCAGG GTGCTTCGGT GAAGCGCGTG
  Y
  TGGATTAAAT TCACGGCGCC GGGTATCTAT CTGCTCAACA GCTAGGATGA GGATGCTATT
  GTCTGGGTGC AGTGAAGCTC TAGTGATGAT TTTTACCAAA GACTGCAATA CAGCTTTACC
  TCATGCTACC AGAGAGCACT CTTGTTCTCT CCAGAAGCCG GCTCACTTGG CAGCCATACC
  CCCTTGTTAG TGAAACGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320352554	CHEV_2_75885817	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258489034					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75878104 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559637	regulatory region 559637	93 bp proximal
Rr559638	regulatory region 559638	1956 bp proximal